Hey Ryan!
Thanks for the quick reply, I really appreciate it! I was initially thinking of separating the two annotation workflows, was just wondering if I could do it together. What I want to do is use the spancat to extract key sentences from a document and then use NER on only those key sentences, because I don't want the NER to run on other parts of the doc. So with regards to that, I think I will have to annotate it separately.
It would be really nice similar to how we can customize pipelines with spacy, we could do the same with prodigy annotations, merging different interfaces and extract one annotation file to train the entire pipeline in one go. But I do understand that it would be a very difficult task to code that haha.
Thanks for the help once again!