This is my phrase list file:
{"label":"terms","pattern":[{"lower":"hydrolyzed"},{"lower":"soy"},{"lower":"protein"},{"lower":"pg"},{"lower":"-"},{"lower":"propyl"},{"lower":"methylsilanediol"}]}
{"label":"terms","pattern":[{"lower":"sampangine"}]}
{"label":"terms","pattern":[{"lower":"ticlopidine"}]}
{"label":"terms","pattern":[{"lower":"trilobatin"}]}
{"label":"terms","pattern":[{"lower":"alpha"},{"lower":"-"},{"lower":"damascone"}]}
{"label":"terms","pattern":[{"lower":"di"},{"lower":"("},{"lower":"2"},{"lower":"-"},{"lower":"ethylhexyl)phthalate"}]}
{"label":"terms","pattern":[{"lower":"cis-4"},{"lower":","},{"lower":"4'-dinitrostilbene"}]}
This is my sample text file.
{"id": 233, "text": "Antioxidant and cryoprotective effects of Amur sturgeon skin gelatin hydrolysates prepared using different commercial proteases in unwashed fish mince were investigated. Gelatin hydrolysates prepared using either Alcalase or Flavourzyme, were effective in preventing lipid oxidation as evidenced by the lower thiobarbituric acid-reactive substances formation. Gelatin hydrolysates were able to retard protein oxidation as indicated by the retarded protein carbonyl formation and lower loss in sulfhydryl content. In the presence of gelatin hydrolysates, unwashed mince had higher transition temperature of myosin and higher enthalpy of myosin and actin as determined by differential scanning calorimetry. Based on low field proton nuclear magnetic resonance analysis, gelatin hydrolysates prevented the displacement of water molecules between the different compartments, thus stabilizing the water associated with myofibrils in unwashed mince induced by repeated freeze-thawing. Oligopeptides in gelatin hydrolysates more likely contributed to the cryoprotective effect. Thus, gelatin hydrolysate could act as both antioxidant and cryoprotectant in unwashed fish mince. Copyright 2015 Elsevier Ltd. All rights reserved. KEYWORDS: Amur sturgeon; Antioxidant activity; Cryoprotective effect; Gelatin hydrolysate; Unwashed fish mince"}
{"id": 234, "text": "In the present research, a combined extraction method of ultrasound-assisted extraction (UAE) in conjunction with solid phase extraction (SPE) was applied to isolation and enrichment of selected drugs (metoprolol, ticlopidine, propranolol, carbamazepine, naproxen, acenocumarol, diclofenac, ibuprofen) from fish tissues. The extracted analytes were separated and determined by ultra-high performance liquid chromatography with UV detection (UHPLC-UV) technique. The selectivity of the developed UHPLC-UV method was confirmed by comparison with ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) analysis. The important parameters, such as composition of type and pH of extraction solvent, solid/liquid rate volume of extraction solvent and number of extraction cycles were studied. The ultrasonic parameters, such as time, power and temperature of the process were optimized by using a half-fraction factorial central composite design (CCD). The mixture of 10 mL of methanol and 7 mL of water (pH 2.2) (three times) was chosen for the extraction of selected drug from fish tissues. The results showed that the highest recoveries of analytes were obtained with an extraction temperature of 40C, ultrasonic power of 300 W, extraction time of 30 min. Under the optimal conditions, the linearity of method was 0.12-5.00 g/g. The determination coefficients (R(2)) were from 0.979 to 0.998. The limits of detection (LODs) and limits of quantification (LOQs) for the extracted compounds were 0.04-0.17 g/g and 0.12-0.50 g/g, respectively. The recoveries were between 85.5% and 115.8%. Copyright 2015 Elsevier B.V. All rights reserved. KEYWORDS: Chromatography; Drugs; Fish; Ultrasound-assisted extraction"}
{"id": 235, "text": "A pretreatment with microwave irradiation was applied to enhance enzyme hydrolysis of corn straw and rice husk immersed in water, aqueous glycerol or alkaline glycerol. Native and pretreated solids underwent enzyme hydrolysis using the extract obtained from the fermentation of Myceliophthora heterothallica, comparing its efficiency with that of the commercial cellulose cocktail Celluclast. The highest saccharification yields, for both corn straw and rice husk, were attained when biomass was pretreated in alkaline glycerol, method that has not been previously reported in literature. Moreover, FTIR, TG and SEM analysis revealed a more significant modification in the structure of corn straw subjected to this pretreatment. Highest global yields were attained with the crude enzyme extract, which might be the result of its content in a great variety of hydrolytic enzymes, as revealed zymogram analysis. Moreover, its hydrolysis efficiency can be improved by its supplementation with commercial -glucosidase. Copyright 2015 Elsevier Ltd. All rights reserved. KEYWORDS: Alkaline glycerol; Enzymatic hydrolysis; Lignocellulosic biomass; Microwave; Pretreatment"}
{"id": 236, "text": "English Spanish Los carbohidratos (CHO) simples en el riesgo cardiometablico, conllevan al incremento de la glucemia y los niveles de insulina y, a largo plazo a Diabetes Mellitus tipo 2 (DM2). OBJETIVO: determinar el comportamiento de cifras de glucemia en pacientes DM2 con la ingesta de dos desayunos. METODOLOGA: Se valoraron por antropometra, bioqumica y clnica 14 pacientes con DM2 a quienes se les administr 2 desayunos en tiempos diferentes con 50 g de CHO representados en galleta tipo dulce y pan blanco. RESULTADOS: se evidenci alteracin en el 92,8% de colesterol de baja Densidad (Ldlc), Colesterol Total (CT) y Colesterol de alta densidad (Hdlc) en el 50% y triacilglicerol (TG) en un 35,7%. El comportamiento de la glucemia para el desayuno con galleta no present diferencia significativa en la cifra preprandial y postprandial a las 2 y 3 horas (p= 0,051 y 0,054 respectivamente) la glucemia de las 2 horas con las 3 horas mostraron significancia (p=0,012). En el desayuno con pan blanco la glucemia preprandial y postprandial a las 2 horas aument (p= 0,006), en tanto, que a las 3 horas, la cifra reportada entre las 2 y 3 horas no presentaron diferencias significativas ( p= 0,114 y 0,051 respectivamente). Al comparar cada una de las glucemias de los desayunos en los periodos preprandial a las 2 y 3 horas no se encontraron diferencias estadsticamente significativas (p>0,05). CONCLUSIN: cantidades isocalricas de carbohidratos de 2 desayunos ingeridos en das diferentes se comportaron de igual manera en las cifras de glucemia. El desayuno con galleta favorecera a la poblacin diabtica por los ingredientes utilizados en su elaboracin dada su dislipidemia. Simple Carbohydrates (CHO) in the cardiometabolic risk, lead to the increase of blood glucose and to insulin levels and in the long-term to Diabetes Mellitus type 2( T2DM). OBJECTIVE: To determine the behavior of glycemia figures in T2DM patients with intake of two breakfasts. METHODOLOGY: We evaluated by anthropometry, biochemical and clinical 14 patients with DM2 who were administered 2 breakfasts at different times with 50g of CHO represented in sweet biscuit and white bread. RESULTS: alteration was evident in 92.8% of low-density cholesterol (Ldlc), Total Cholesterol (TC) and high density cholesterol (Hdlc) in 50% and triacylglycerol (TG) in 35.7%. The behavior of blood sugar for breakfast with a sweet biscuit did not show significant difference in the preprandial and postprandial figure at the 2and 3 hours (p = 0.051 and 0.054 respectively) blood glucose 2 hours to 3 hours showed significance (p = 0.012). At breakfast with white bread the preprandial and postprandial blood glucose increased at the 2 hours (p = 0.006), while at the 3 hours, the number reported between 2 and 3 hours did not show significantly difference(p = 0.114 and 0.051 respectively). When comparing each of glycemia of the breakfasts in the preprandial periods at 2 and 3 hours, no statistically significant differences were found (p> 0.05). CONCLUSION: isocaloric amounts of carbohydrates of two eaten breakfasts on different days acted similarly in glycemia figures. Breakfast with cookie favor the diabetic population because of the ingredients used on its preparation given their dyslipidemia. Copyright AULA MEDICA EDICIONES 2014. Published by AULA MEDICA. All rights reserved. Comment in [FIGURES PERFORMANCE OF GLYCEMIA IN TYPE 2 DIABETIC PATIENTS WITH INTAKE OF TWO BREAKFAST WITH THE SAME AMOUNT OF CARBOHYDRATES]. [Nutr Hosp. 2015]"}
And when I run Prodigy, like so;
python -m prodigy ner.manual phrase_list_annot blank:en sample_text.jsonl --label TERMs --patterns phrase_list_jsonl.jsonl
Then I can confirm that the phrase list is able to detect this:
Can you confirm this is happening on your machine too? If so, there may be an error in your script that turns the data into a CSV. Do you have any information on the lemmatizer.lemmatize that you're using?
