I experience an issue where the field SCORE
is left out of the meta-data section when patterns are found. While the SCORE
is left out, PATTERN
is shown. If a pattern isn't found, the SCORE
field is shown.
I am running the following command:
PRODIGY_LOGGING=basic prodigy textcat.teach name-of-project en_core_web_lg data.jsonl --label RELEVANT --patterns patterns.jsonl
First line of data.jsonl:
{"text": "To perform the biopanning of a mimotope peptide with reduced affinity to anti-ochratoxin A (OTA) monoclonal antibodies (mAbs), we executed two improved biopanning approaches with a commercial 7-mer peptide library. In the first approach, anti-mouse IgG antibodies were used to erect the anti-OTA mAbs; in the second approach, an ultralow OTA concentration (0.1 ng/mL) was used to perform the competitive elution of phage particles. After the fourth round of biopanning was completed, 30 identified clones were positive phage particles; of these phage particles, 16 exhibited strong competitive inhibition with a low OTA concentration of 0.1 ng/mL. DNA sequencing results revealed that the 16 phage particles represented six different peptide sequences. Among these particles, the phage particle with a peptide sequence of \"GMVQTIF\" showed the highest sensitivity to OTA detection. The biotinylated 12-mer peptide \"GMVQTIF-GGGSK-biotin\" was designed as a competing antigen to develop a competitive peptide ELISA. Under the optimal parameters, the proposed peptide ELISA with the biotinylated 12-mar peptide as a competing antigen exhibited good dynamic linear detection for OTA in the range of 0.005 ng/mL0.2 ng/mL with a detection limit of 0.001 ng/mL. The median inhibition concentration of OTA was 0.024 ng/mL (n=6), which is approximately fivefold more efficient as a competing antigen than the OTAHRP conjugates. Reaction kinetics revealed that the biotinylated 12-mer peptide exhibited lower affinity to anti-OTA mAbs than the conventional chemical OTA antigen. The practicality of the proposed peptide ELISA was compared with a conventional ELISA method. In summary, this study demonstrated a novel concept of the development of phage-free peptide ELISA for the detection of OTA by using a biotinylated mimotope peptide as a competing antigen. This novel strategy can be applied to sensitively detect other toxic small molecules during food safety monitoring. (C) 2015 Elsevier B.V. All rights reserved.", "meta": {"relevant": "0", "id": "1", "authors": "Zou, X. Q.; Chen, C. C.; Huang, X. L.; Chen, X. L.; Wang, L.; Xiong, Y. H.", "year": "2016", "journal": "Talanta", "volume": "146", "pages": "394-400", "title": "Phage-free peptide ELISA for ochratoxin A detection based on biotinylated mimotope as a competing antigen"}}
First line of patterns.jsonl:
{"label": "RELEVANT", "pattern": [{"lower": "fumonisins"}]}