Yes! All you have to do is add the vectors to spaCy, save out the model and load it with Prodigy. We actually have an end-to-end example script for adding fastText vectors to spaCy: see this page for the code and more details. Here’s the script:
After adding the vectors, you can simply call nlp.to_disk('/path/to/model'), which saves the full model including the vectors to a directory. You can then load it into Prodigy using that path – for example: