Hi @beskow!
Thanks for your question and welcome to the Prodigy community 
I found this similar issue where the issue looked like the issue was sqlite3 needed to be compiled.
Can you run this from the terminal like this:
sqlite3
If it doesn't work, then we've confirmed the issue is with sqlite3, not Prodigy.
sqlite3 comes by default with Mac's so this is a bit odd. I found a little bit of other info on StackExchange but you may need to search a little to reinstall/compile sqlite3 as I'm not an expert on it.
If you use brew, like this post suggests maybe just run either brew install sqlite3 or brew upgrade sqlite3.
Let me know if this helps or if you're able to get things working (and if so, how you resolved it so you can help others if they have this issue).